I had this same charger in a champion and I was able to hook the purple wire coming out of the charger to the gas tank and charge trolling motor batteries with the main motor running. Confirmed with the charge indicator lights on the charger coming on. I think the instructions for the unit were pretty good, and you can download them from the website. The boat I had just used a standard fuel gauge, not smartcraft. Hope that helps might be worth a try before you pull all that wire through.Jon