Just a suggestion, but why dont you plug the charger in and put a multimeter on each battery? Depending on your battery chargers charging profile, you should see 14 to 15 volts on each battery, representing each bank of the charger, while they are topping your batteries off. If you have a bank thats not charging at all, you will read battery voltage only. After a days fishing, I would expect the battery voltage to be 12 volts or less. When the charger goes to the float or maintenance mode it will be less than 14 volts. With new batteries now, this would be a logical next step in your troubleshooting.